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DER1 peroxisomal 2,4-dienoyl-CoA reductase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199624, updated on 21-Dec-2023

Summary

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Gene symbol
DER1
Gene description
peroxisomal 2,4-dienoyl-CoA reductase
Locus tag
PHATRDRAFT_11319
Gene type
protein coding
RNA name
peroxisomal 2,4-dienoyl-CoA reductase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_011673.1 (730477..731367, complement)

Chromosome 5 - NC_011673.1Genomic Context describing neighboring genes Neighboring gene suppressor of stem-loop protein 1 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011673.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2,4-dienoyl-CoA reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
peroxisomal 2,4-dienoyl-CoA reductase
XP_002179055.1
  • May be targeted to peroxisomes. Catalyzes the conversion of 2,4-dienoyl-CoA + NADP[H] + [H] to 3-trans-enoyl-CoA + NADP. The conjugated double bonds at positions 2 and 4 of the substrate may be either or both, cis or trans. Involved in fatty acid beta oxidation.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011673.1 Reference assembly

    Range
    730477..731367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179019.1 → XP_002179055.1  peroxisomal 2,4-dienoyl-CoA reductase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179055.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X8L1, B7FW77
    Conserved Domains (1) summary
    cl21454
    Location:12 → 265
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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