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HDS 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199630, updated on 2-May-2024

Summary

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Gene symbol
HDS
Gene description
1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase
Locus tag
PHATRDRAFT_44955
Gene type
protein coding
RNA name
1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_011673.1 (765110..767756, complement)

Chromosome 5 - NC_011673.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene cysteine desulfurase for iron-sulfur cluster formation suf Neighboring gene hypothetical protein Neighboring gene diatom PHytochrome 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011673.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin) IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in terpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase
XP_002179061.1
  • also called IspG; MEP pathway for isoprenoid biosynthesis; chloroplast precursor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011673.1 Reference assembly

    Range
    765110..767756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179025.1 → XP_002179061.1  1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179061.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B6DX96, B7FV10
    Conserved Domains (3) summary
    PLN02925
    Location:2 → 742
    PLN02925; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
    pfam04551
    Location:83 → 353
    GcpE; GcpE protein
    cl19500
    Location:599 → 735
    GcpE; GcpE protein
Nucleotide Protein
Heading Accession and Version

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