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FUM1 precursor of fumarase fumarase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200108, updated on 21-Dec-2023

Summary

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Gene symbol
FUM1
Gene description
precursor of fumarase fumarase
Locus tag
PHATRDRAFT_19708
Gene type
protein coding
RNA name
precursor of fumarase fumarase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_011674.1 (558881..561131)

Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene dolichyl-phosphate mannosyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011674.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fumarate hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of precursor metabolites and energy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of fumarase fumarase
XP_002179239.1
  • In the tricarboxylic acid cycle, catalyzes the reaction: fumarate + H2O = S-malate. The enzyme effects a stereospecific trans hydration and is iron-dependent.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011674.1 Reference assembly

    Range
    558881..561131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179203.1 → XP_002179239.1  precursor of fumarase fumarase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179239.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FWX5
    Conserved Domains (3) summary
    PLN00133
    Location:1 → 567
    PLN00133; class I-fumerate hydratase; Provisional
    pfam05681
    Location:78 → 350
    Fumerase; Fumarate hydratase (Fumerase)
    pfam05683
    Location:358 → 564
    Fumerase_C; Fumarase C-terminus
Nucleotide Protein
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