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PHATRDRAFT_50885 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200500, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_50885
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_50885
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Sequence:
Chromosome: 7; NC_011675.1 (70759..72923)

Chromosome 7 - NC_011675.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011675.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011675.1 Reference assembly

    Range
    70759..72923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179537.1 → XP_002179573.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179573.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FXK7
    Conserved Domains (3) summary
    PRK04173
    Location:77 → 599
    PRK04173; glycyl-tRNA synthetase; Provisional
    cd00774
    Location:81 → 478
    GlyRS-like_core; Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' ...
    cd00858
    Location:478 → 600
    GlyRS_anticodon; GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
Nucleotide Protein
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