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PHATRDRAFT_45434 nad-dependent epimerase/dehydratase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200545, updated on 4-Nov-2022

Summary

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Gene symbol
PHATRDRAFT_45434
Gene description
nad-dependent epimerase/dehydratase
Locus tag
PHATRDRAFT_45434
Gene type
protein coding
RNA name
nad-dependent epimerase/dehydratase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_011675.1 (142315..143520)

Chromosome 7 - NC_011675.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011675.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
nad-dependent epimerase/dehydratase
XP_002179589.1
  • Precise function unknown. A member of a family of related epimerases and dehydratases, probably catalyzes either of two reactions: (1) the interconversion of UDP-D-glucose and UDP-D-galactose; or (2) the dehydration of dTDP-glucose in pathways leading to synthesis of nucleotide-6-deoxysugars by the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-D-glucose + H2O. Uses bound NAD+ as co-factor.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011675.1 Reference assembly

    Range
    142315..143520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179553.1 → XP_002179589.1  nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179589.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TFB8, B7FXN9
    Conserved Domains (2) summary
    PLN02695
    Location:1 → 362
    PLN02695; GDP-D-mannose-3',5'-epimerase
    COG0451
    Location:14 → 328
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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