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HemF_3 coproporphyrinogen oxidase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7200691, updated on 21-Dec-2023

Summary

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Gene symbol
HemF_3
Gene description
coproporphyrinogen oxidase
Locus tag
PHATRDRAFT_12186
Gene type
protein coding
RNA name
coproporphyrinogen oxidase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_011675.1 (206745..207623)

Chromosome 7 - NC_011675.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011675.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables coproporphyrinogen oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protoporphyrinogen IX biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
coproporphyrinogen oxidase
XP_002179603.1
  • eighth step in heme synthesis; contains ER signal peptide at extended N terminus (2 versions possible, extension of 99 aa / SignalP score = 0.953; extension of 109 aa / SignalP score = 0.912); putatively chloroplast targeted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011675.1 Reference assembly

    Range
    206745..207623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002179567.1 → XP_002179603.1  coproporphyrinogen oxidase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002179603.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9S8Z1, B7FXR7
    Conserved Domains (1) summary
    PLN02873
    Location:12 → 292
    PLN02873; coproporphyrinogen-III oxidase
Nucleotide Protein
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