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PHATRDRAFT_28056 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7201888, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_28056
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_28056
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 10
Exon count:
2
Sequence:
Chromosome: 10; NC_011678.1 (942142..944703, complement)

Chromosome 10 - NC_011678.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011678.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011678.1 Reference assembly

    Range
    942142..944703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181074.1 → XP_002181110.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181110.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G1X4
    Conserved Domains (3) summary
    PLN02475
    Location:4 → 756
    PLN02475; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
    pfam01717
    Location:424 → 745
    Meth_synt_2; Cobalamin-independent synthase, Catalytic domain
    cl00464
    Location:5 → 364
    URO-D_CIMS_like; The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. ...
Nucleotide Protein
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