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PHATRDRAFT_47293 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7202328, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_47293
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_47293
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_011681.1 (210541..212283)

Chromosome 13 - NC_011681.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011681.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylpyrimidine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphomethylpyrimidine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thiamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011681.1 Reference assembly

    Range
    210541..212283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181472.1 → XP_002181508.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181508.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TIZ6, B7G3W4
    Conserved Domains (3) summary
    PLN02898
    Location:53 → 572
    PLN02898; HMP-P kinase/thiamin-monophosphate pyrophosphorylase
    cd00564
    Location:389 → 577
    TMP_TenI; Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- ...
    pfam08543
    Location:52 → 332
    Phos_pyr_kin; Phosphomethylpyrimidine kinase
Nucleotide Protein
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