U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PHATRDRAFT_21592 diaminopimelate decarboxylase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7202547, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
PHATRDRAFT_21592
Gene description
diaminopimelate decarboxylase
Locus tag
PHATRDRAFT_21592
Gene type
protein coding
RNA name
diaminopimelate decarboxylase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PHATRDRAFT_21592 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_011681.1 (556788..558429, complement)

Chromosome 13 - NC_011681.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_011681.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diaminopimelate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
diaminopimelate decarboxylase
XP_002181752.1
  • Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities.; DAP decarboxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011681.1 Reference assembly

    Range
    556788..558429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181716.1 → XP_002181752.1  diaminopimelate decarboxylase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181752.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TAG8, B7G3A2
    Conserved Domains (2) summary
    cd06828
    Location:63 → 452
    PLPDE_III_DapDC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase
    PRK11165
    Location:63 → 475
    PRK11165; diaminopimelate decarboxylase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials