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PHATRDRAFT_2394 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7202563, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_2394
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_2394
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_011681.1 (620479..621597)

Chromosome 13 - NC_011681.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene malonyl-CoA:ACP transacylase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011681.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteinyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011681.1 Reference assembly

    Range
    620479..621597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002181563.1 → XP_002181599.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002181599.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9SDU3, B7G3D5
    Conserved Domains (2) summary
    pfam01406
    Location:1 → 351
    tRNA-synt_1e; tRNA synthetases class I (C) catalytic domain
    cl00015
    Location:4 → 344
    nt_trans; nucleotidyl transferase superfamily
Nucleotide Protein
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