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PHATRDRAFT_14762 isocitrate dehydrogenase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203279, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_14762
Gene description
isocitrate dehydrogenase
Locus tag
PHATRDRAFT_14762
Gene type
protein coding
RNA name
isocitrate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 16
Exon count:
2
Sequence:
Chromosome: 16; NC_011684.1 (255704..256867)

Chromosome 16 - NC_011684.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011684.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
isocitrate dehydrogenase
XP_002182499.1
  • Part of the TCA cycle: Isocitrate + NADP(+) = 2-oxoglutarate + CO(2) + NADPH. The model contains a mitochondrial targeting sequence according to targetP. Appears to be upregulated under conditions of nitrate depletion.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011684.1 Reference assembly

    Range
    255704..256867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182463.1 → XP_002182499.1  isocitrate dehydrogenase, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182499.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G620
    Conserved Domains (1) summary
    cl00445
    Location:13 → 354
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase
Nucleotide Protein
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