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PHATRDRAFT_14962 cystathionine beta-lyase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7203619, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_14962
Gene description
cystathionine beta-lyase
Locus tag
PHATRDRAFT_14962
Gene type
protein coding
RNA name
cystathionine beta-lyase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 17
Exon count:
1
Sequence:
Chromosome: 17; NC_011685.1 (481051..482253)

Chromosome 17 - NC_011685.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011685.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cystathionine gamma-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteine biosynthetic process via cystathionine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transsulfuration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cystathionine beta-lyase
XP_002182846.1
  • A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues; CBL; Beta-cystathionase; Cysteine lyase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011685.1 Reference assembly

    Range
    481051..482253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002182810.1 → XP_002182846.1  cystathionine beta-lyase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002182846.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X709, B7G754
    Conserved Domains (1) summary
    COG0626
    Location:1 → 390
    MetC; Cystathionine beta-lyase/cystathionine gamma-synthase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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