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eogt EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780148, updated on 25-Apr-2024

Summary

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Official Symbol
eogtprovided by Xenbase
Official Full Name
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-994619
See related
Ensembl:ENSXETG00000016165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
aer61; c3orf64
Orthologs
human mouse all
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Genomic context

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See eogt in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (142048354..142085292)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (131476532..131505040)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene ubiquitin like modifier activating enzyme 3 Neighboring gene TATA element modulatory factor 1 Neighboring gene TAFA chemokine like family member 4 Neighboring gene TAFA chemokine like family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC147535

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein O-acetylglucosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein O-acetylglucosaminyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in protein O-GlcNAcylation via threonine IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein O-linked glycosylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
is_active_in endoplasmic reticulum lumen IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
EGF domain-specific O-linked N-acetylglucosamine transferase
Names
extracellular O-linked N-acetylglucosamine transferase
glycosyltransferase AER61
NP_001072691.1
XP_031756090.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079223.1 → NP_001072691.1  EGF domain-specific O-linked N-acetylglucosamine transferase precursor

    See identical proteins and their annotated locations for NP_001072691.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124028
    UniProtKB/Swiss-Prot
    Q08CY9
    UniProtKB/TrEMBL
    A0A6I8RW00, A0A8J1JGF6
    Related
    ENSXETP00000035246.3, ENSXETT00000035246.4
    Conserved Domains (1) summary
    pfam04577
    Location:243 → 470
    DUF563; Protein of unknown function (DUF563)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    142048354..142085292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031900230.1 → XP_031756090.1  EGF domain-specific O-linked N-acetylglucosamine transferase isoform X1

    UniProtKB/Swiss-Prot
    Q08CY9
    UniProtKB/TrEMBL
    A0A6I8RW00, A0A8J1JGF6
    Related
    ENSXETP00000037316.5, ENSXETT00000037316.5
    Conserved Domains (1) summary
    pfam04577
    Location:243 → 470
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08CY9.1 GenPept UniProtKB/Swiss-Prot:Q08CY9

Gene LinkOut

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