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PF3D7_0907900 peptide deformylase [ Plasmodium falciparum 3D7 ]

Gene ID: 813356, updated on 10-Sep-2023

Summary

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Gene symbol
PF3D7_0907900
Gene description
peptide deformylase
Locus tag
PF3D7_0907900
Gene type
protein coding
RNA name
peptide deformylase
RefSeq status
PROVISIONAL
Organism
Plasmodium falciparum 3D7 (isolate: 3D7)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
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Genomic context

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Location:
chromosome: 9
Exon count:
2
Sequence:
Chromosome: 9; NC_004330.2 (367865..368789, complement)

Chromosome 9 - NC_004330.2Genomic Context describing neighboring genes Neighboring gene proteasome activator 28 subunit beta, putative Neighboring gene ribosomal protein L35, apicoplast, putative Neighboring gene plasma membrane protein 1, putative Neighboring gene apicoplast integral membrane protein, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004330.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an eukaryotic peptide deformylase from Plasmodium falciparum. Bracchi-Ricard V, et al. Arch Biochem Biophys, 2001 Dec 15. PMID 11747293
  2. Localization of organellar proteins in Plasmodium falciparum using a novel set of transfection vectors and a new immunofluorescence fixation method. Tonkin CJ, et al. Mol Biochem Parasitol, 2004 Sep. PMID 15279947
  3. Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. Boucher MJ, et al. PLoS Biol, 2018 Sep. PMID 30212465, Free PMC Article
  4. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GeneDB

Function Evidence Code Pubs
enables ferrous iron binding TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within N-terminal protein amino acid modification IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within co-translational protein modification IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in apicoplast HDA PubMed 
located_in apicoplast IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
peptide deformylase
XP_001351951.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004330.2 Reference assembly

    Range
    367865..368789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001351915.1 → XP_001351951.1  peptide deformylase [Plasmodium falciparum 3D7]

    See identical proteins and their annotated locations for XP_001351951.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A024V614, A0A024W8G2, A0A024WSF3, Q8I372, W7FJ25, W7FMQ0, W7K5J4
    Conserved Domains (1) summary
    pfam01327
    Location:66 → 216
    Pep_deformylase; Polypeptide deformylase
Nucleotide Protein
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