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RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 9366, updated on 10-Oct-2023

Summary

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Official Symbol
RAB9BP1provided by HGNC
Official Full Name
RAB9B, member RAS oncogene family pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:9793
See related
Ensembl:ENSG00000232159 AllianceGenome:HGNC:9793
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RAB9P1
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Genomic context

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See RAB9BP1 in Genome Data Viewer
Location:
5q21.2-q21.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (105099474..105100098)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (105603685..105604309)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (104435175..104435799)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379109 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:103985884-103986480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:104089973-104090787 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80715 Neighboring gene RNA, U6 small nuclear 334, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287201-104287702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287703-104288202 Neighboring gene MPRA-validated peak5386 silencer Neighboring gene uncharacterized LOC105379110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene RNA, 5S ribosomal pseudogene 189

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. Davies JP, et al. Genomics, 1997 Apr 1. PMID 9126495
  2. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. He J, et al. Circ Cardiovasc Genet, 2013 Dec. PMID 24165912, Free PMC Article
  3. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. Low SK, et al. Cancer Sci, 2013 Aug. PMID 23648065, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.
EBI GWAS Catalog
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RAB9, member RAS oncogene family, pseudogene 1
  • RAB9A, member RAS oncogene family pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_000039.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091987
    Related
    ENST00000519581.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    105099474..105100098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    105603685..105604309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_004250.1: Suppressed sequence

    Description
    NM_004250.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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