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idnD L-idonate 5-dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944769, updated on 11-Apr-2024

Summary

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Gene symbol
idnD
Gene description
L-idonate 5-dehydrogenase
Primary source
ASAP:ABE-0013975
Locus tag
b4267
See related
ECOCYC:G7893
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4260; yjgV
Summary
L-idonate 5-dehydrogenase catalyzes the reversible oxidation of L-idonate to 5-ketogluconate. [More information is available at EcoCyc: G7893].
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Genomic context

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Sequence:
NC_000913.3 (4493375..4494406, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-idonate/5-ketogluconate/gluconate transporter Neighboring gene 5-keto-D-gluconate 5-reductase Neighboring gene D-gluconate kinase, thermosensitive Neighboring gene NADPH-dependent aldehyde reductase Ahr

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli. Bausch C, et al. J Bacteriol, 2004 Mar. PMID 14973046, Free PMC Article
  2. Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonic acid catabolism in Escherichia coli. Bausch C, et al. J Bacteriol, 1998 Jul. PMID 9658018, Free PMC Article
  3. What's for dinner?: Entner-Doudoroff metabolism in Escherichia coli. Peekhaus N, et al. J Bacteriol, 1998 Jul. PMID 9657988, Free PMC Article
  4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables L-idonate 5-dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables L-idonate 5-dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-idonate 5-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in L-idonate catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-idonate catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
L-idonate 5-dehydrogenase
NP_418688.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4493375..4494406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418688.1 L-idonate 5-dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418688.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T6Q4L2
    Conserved Domains (1) summary
    PRK09880
    Location:1 → 343
    PRK09880; L-idonate 5-dehydrogenase; Provisional
Nucleotide Protein
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Gene LinkOut

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