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puuB gamma-glutamylputrescine oxidase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945072, updated on 11-Apr-2024

Summary

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Gene symbol
puuB
Gene description
gamma-glutamylputrescine oxidase
Primary source
ASAP:ABE-0004378
Locus tag
b1301
See related
ECOCYC:EG11822
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1296; ordL; ycjA
Summary
PuuB is probably the -glutamylputrescine oxidase in a putrescine utilization pathway; together with PuuC, -glutamyl--aminobutyrate is produced from -glutamylputrescine . [More information is available at EcoCyc: EG11822].
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Genomic context

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Sequence:
NC_000913.3 (1364232..1365512)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional repressor PuuR Neighboring gene gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase Neighboring gene 4-aminobutyrate aminotransferase PuuE Neighboring gene DNA-binding transcriptional dual regulator PspF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The RIB element in the goaG-pspF intergenic region of Escherichia coli. Jovanovic G, et al. J Bacteriol, 1997 May. PMID 9150200, Free PMC Article
  2. Cloning an Escherichia coli gene encoding a protein remarkably similar to mammalian aldehyde dehydrogenases. Heim R, et al. Gene, 1991 Mar 1. PMID 1840553
  3. A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12. Kurihara S, et al. J Biol Chem, 2005 Feb 11. PMID 15590624
  4. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in putrescine catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
gamma-glutamylputrescine oxidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1364232..1365512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415817.1 gamma-glutamylputrescine oxidase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415817.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A827YH68, A0A828P3S9
    Conserved Domains (1) summary
    COG0665
    Location:25 → 406
    DadA; Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]
Nucleotide Protein
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