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rfbA glucose-1-phosphate thymidylyltransferase 1 [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945154, updated on 2-May-2024

Summary

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Gene symbol
rfbA
Gene description
glucose-1-phosphate thymidylyltransferase 1
Primary source
ASAP:ABE-0006762
Locus tag
b2039
See related
ECOCYC:EG11978
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2033; rmlA; som
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Genomic context

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Sequence:
NC_000913.3 (2110138..2111019, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative O-antigen polymerase Neighboring gene UDP-galactopyranose mutase Neighboring gene polyisoprenol-linked O16-antigen repeat unit flippase Neighboring gene dTDP-4-dehydrorhamnose 3,5-epimerase Neighboring gene dTDP-4-dehydrorhamnose reductase Neighboring gene dTDP-glucose 4,6-dehydratase 1 Neighboring gene UTP:glucose-1-phosphate uridylyltransferase, low activity

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [RmlA gene deletion affects biofilm formation by avian pathogenic Escherichia coli]. Han Y, et al. Wei Sheng Wu Xue Bao, 2013 Oct 4. PMID 24409761
  2. Kinetic and crystallographic analyses support a sequential-ordered bi bi catalytic mechanism for Escherichia coli glucose-1-phosphate thymidylyltransferase. Zuccotti S, et al. J Mol Biol, 2001 Nov 2. PMID 11697907
  3. Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli. Inoue K, et al. J Mol Microbiol Biotechnol, 2006. PMID 16825789
  4. Molecular typing of Escherichia coli strains isolated from food in Casablanca (Morocco). Badri S, et al. Cell Mol Biol (Noisy-le-grand), 2009 Jun 15. PMID 19656466
  5. Accumulation of the enterobacterial common antigen lipid II biosynthetic intermediate stimulates degP transcription in Escherichia coli. Danese PN, et al. J Bacteriol, 1998 Nov. PMID 9811644, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The rmlA deletion mutant did not affect the growth and motility but enhanced the biofilm formation.
    Title: [RmlA gene deletion affects biofilm formation by avian pathogenic Escherichia coli].
  2. Results showed a reproducible and clear cut classification with molecular polymorphism of rfb gene cluster and flagella gene fliC.
    Title: Molecular typing of Escherichia coli strains isolated from food in Casablanca (Morocco).
  3. Era and RbfA have an overlapping function that is essential for ribosome biogenesis.
    Title: Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables glucose-1-phosphate thymidylyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables glucose-1-phosphate thymidylyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in O antigen biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in dTDP-rhamnose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in extracellular polysaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipopolysaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein homotetramerization IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
glucose-1-phosphate thymidylyltransferase 1
NP_416543.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2110138..2111019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416543.1 glucose-1-phosphate thymidylyltransferase 1 [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416543.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5C9AK78
    Conserved Domains (1) summary
    TIGR01207
    Location:5 → 290
    rmlA; glucose-1-phosphate thymidylyltransferase, short form
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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