U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sdhD succinate:quinone oxidoreductase, membrane protein SdhD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945322, updated on 25-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
sdhD
Gene description
succinate:quinone oxidoreductase, membrane protein SdhD
Primary source
ASAP:ABE-0002464
Locus tag
b0722
See related
ECOCYC:EG10934
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
cybS; dhsD; ECK0711
Summary
The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur. [More information is available at EcoGene: EG10934]. One of two membrane proteins in the four subunit enzyme. [More information is available at EcoCyc: EG10934].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (755560..755907)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene citrate synthase Neighboring gene protein YbgV Neighboring gene protein YbgU Neighboring gene succinate:quinone oxidoreductase, membrane protein SdhC Neighboring gene succinate:quinone oxidoreductase, FAD binding protein Neighboring gene succinate:quinone oxidoreductase, iron-sulfur cluster binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arc and Sfr functions of the Escherichia coli K-12 arcA gene product are genetically and physiologically separable. Silverman PM, et al. J Bacteriol, 1991 Sep. PMID 1885542, Free PMC Article
  2. Identification of genes negatively regulated by Fis: Fis and RpoS comodulate growth-phase-dependent gene expression in Escherichia coli. Xu J, et al. J Bacteriol, 1995 Feb. PMID 7860604, Free PMC Article
  3. Screening of detergents for solubilization, purification and crystallization of membrane proteins: a case study on succinate:ubiquinone oxidoreductase from Escherichia coli. Shimizu H, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2008 Sep 1. PMID 18765923, Free PMC Article
  4. Alternative sites for proton entry from the cytoplasm to the quinone binding site in Escherichia coli succinate dehydrogenase. Cheng VW, et al. Biochemistry, 2008 Sep 2. PMID 18690748
  5. A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II. Tomasiak TM, et al. J Biol Chem, 2008 May 30. PMID 18385138, Free PMC Article

See all (69) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables electron transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables electron transfer activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables heme binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables heme binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-CH group of donors IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in aerobic electron transport chain NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in aerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within aerobic respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cytochrome complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cytochrome complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of succinate dehydrogenase complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
succinate:quinone oxidoreductase, membrane protein SdhD
NP_415250.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    755560..755907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415250.1 succinate:quinone oxidoreductase, membrane protein SdhD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415250.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AKP2, A0A8S7YNL1
    Conserved Domains (1) summary
    PRK09488
    Location:1 → 115
    sdhD; succinate dehydrogenase membrane anchor subunit
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.