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ydiO putative acyl-CoA dehydrogenase YdiO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945626, updated on 2-May-2024

Summary

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Gene symbol
ydiO
Gene description
putative acyl-CoA dehydrogenase YdiO
Primary source
ASAP:ABE-0005658
Locus tag
b1695
See related
ECOCYC:G6918
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1693
Summary
YdiO is predicted to be an acyl-CoA dehydrogenase . [More information is available at EcoCyc: G6918].
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Genomic context

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Sequence:
NC_000913.3 (1777196..1778347)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acetate-CoA transferase YdiF Neighboring gene putative DNA-binding transcriptional regulator YdiP Neighboring gene putative electron transfer flavoprotein subunit YdiQ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [Escherichia coli ydiO and ydiQRST genes encode components of acyl-CoA dehydrogenase complex of anaerobic fatty acid β-oxidation pathway]. Gulevich AY, et al. Genetika, 2016 Oct. PMID 29369593
  2. Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals. Dellomonaco C, et al. Nature, 2011 Aug 10. PMID 21832992
  3. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
  4. A new Escherichia coli metabolic competency: growth on fatty acids by a novel anaerobic beta-oxidation pathway. Campbell JW, et al. Mol Microbiol, 2003 Feb. PMID 12535077
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Escherichia coli ydiO and ydiQRST genes encode components of acyl-CoA dehydrogenase complex of anaerobic fatty acid beta-oxidation pathway.
    Title: [Escherichia coli ydiO and ydiQRST genes encode components of acyl-CoA dehydrogenase complex of anaerobic fatty acid β-oxidation pathway].
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables acyl-CoA dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 1-butanol biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in fatty acid beta-oxidation using acyl-CoA dehydrogenase IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative acyl-CoA dehydrogenase YdiO

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1777196..1778347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416210.4 putative acyl-CoA dehydrogenase YdiO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416210.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A454A4E5, A0A478KZ60, A0A6N8QS74, A0A827XI60, A0AA87BVN7, B1LE41, E1IKJ0, E1JFV8, E6BDV9, U9ZLR8, W1ETG2
    Conserved Domains (1) summary
    PRK12341
    Location:1 → 381
    PRK12341; acyl-CoA dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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