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oppD murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945802, updated on 2-May-2024

Summary

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Gene symbol
oppD
Gene description
murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppD
Primary source
ASAP:ABE-0004178
Locus tag
b1246
See related
ECOCYC:EG10677
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1240
Summary
OppD is an ATP-binding component of the oligopeptide ABC transporter and the murein tripeptide ABC transporter. [More information is available at EcoCyc: EG10677].
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Genomic context

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Sequence:
NC_000913.3 (1304754..1305767)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB Neighboring gene murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppC Neighboring gene murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF Neighboring gene DUF440 domain-containing protein YciU Neighboring gene cardiolipin synthase A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic organization of the oligopeptide permease (opp) locus of Salmonella typhimurium and Escherichia coli. Hogarth BG, et al. J Bacteriol, 1983 Mar. PMID 6338001, Free PMC Article
  2. Structure determination of OppA at 2.3 A resolution using multiple-wavelength anomalous dispersion methods. Glover ID, et al. Acta Crystallogr D Biol Crystallogr, 1995 Jan 1. PMID 15299334
  3. The periplasmic murein peptide-binding protein MppA is a negative regulator of multiple antibiotic resistance in Escherichia coli. Li H, et al. J Bacteriol, 1999 Aug. PMID 10438753, Free PMC Article
  4. The structural basis of sequence-independent peptide binding by OppA protein. Tame JR, et al. Science, 1994 Jun 10. PMID 8202710
  5. Genetic analysis of Escherichia coli oligopeptide transport mutants. Andrews JC, et al. J Bacteriol, 1985 Feb. PMID 2981814, Free PMC Article

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligopeptide import across plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in tripeptide import across plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppD
YP_025300.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1304754..1305767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_025300.1 murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_025300.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7TMP3
    Conserved Domains (1) summary
    PRK09473
    Location:8 → 336
    oppD; oligopeptide transporter ATP-binding component; Provisional
Nucleotide Protein
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