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ydcU putative ABC transporter membrane subunit YdcU [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945976, updated on 6-Oct-2023

Summary

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Gene symbol
ydcU
Gene description
putative ABC transporter membrane subunit YdcU
Primary source
ASAP:ABE-0004807
Locus tag
b1442
See related
ECOCYC:G6753
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1436
Summary
Putative YdcVUTS ABC transport system. ydcU, potB and potH are paralogs. [More information is available at EcoGene: EG13764]. YdcU is a membrane component of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6753].
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Genomic context

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Sequence:
NC_000913.3 (1513831..1514772)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcV Neighboring gene gamma-aminobutyraldehyde dehydrogenase Neighboring gene uncharacterized protein YncL

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
putative ABC transporter membrane subunit YdcU

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1513831..1514772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415959.1 putative ABC transporter membrane subunit YdcU [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415959.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WW44
    Conserved Domains (1) summary
    COG1176
    Location:39 → 313
    PotB; ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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