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ydcT putative ABC transporter ATP-binding protein YdcT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946007, updated on 4-Apr-2024

Summary

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Gene symbol
ydcT
Gene description
putative ABC transporter ATP-binding protein YdcT
Primary source
ASAP:ABE-0004805
Locus tag
b1441
See related
ECOCYC:G6752
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1435
Summary
Putative YdcVUTS ABC transport system. potA and ydcT are paralogs. [More information is available at EcoGene: EG13763]. YdcT is an ATP-binding component of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6752].
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Genomic context

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Sequence:
NC_000913.3 (1512817..1513830)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter membrane subunit YdcU Neighboring gene putative ABC transporter membrane subunit YdcV Neighboring gene gamma-aminobutyraldehyde dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  3. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
  4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex IEA
Inferred from Electronic Annotation
more info
  
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ABC transporter ATP-binding protein YdcT

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1512817..1513830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415958.1 putative ABC transporter ATP-binding protein YdcT [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415958.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F4V1V6
    Conserved Domains (1) summary
    COG3842
    Location:1 → 335
    PotA; ABC-type Fe3+/spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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