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fdnI formate dehydrogenase N subunit gamma [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946038, updated on 4-Apr-2024

Summary

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Gene symbol
fdnI
Gene description
formate dehydrogenase N subunit gamma
Primary source
ASAP:ABE-0004921
Locus tag
b1476
See related
ECOCYC:EG11229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1470
Summary
FdnI, the membrane subunit of formate dehydrogenase-N, contains two heme b556 groups and a site for menaquinone reduction. [More information is available at EcoCyc: EG11229].
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Genomic context

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Sequence:
NC_000913.3 (1551338..1551991)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene amino acid exporter YddG Neighboring gene formate dehydrogenase N subunit alpha Neighboring gene formate dehydrogenase N subunit beta Neighboring gene DNA-binding transcriptional regulator YddM Neighboring gene ethanol dehydrogenase/alcohol dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Formate dehydrogenase from Escherichia coli. Enoch HG, et al. Methods Enzymol, 1982. PMID 6755185
  2. Anaerobic transport in Escherichia coli membrane vesicles. Boonstra J, et al. J Biol Chem, 1975 Sep 10. PMID 1099094
  3. Purification and crystallization of the respiratory complex formate dehydrogenase-N from Escherichia coli. Jormakka M, et al. Acta Crystallogr D Biol Crystallogr, 2002 Jan. PMID 11752799
  4. Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12. Li J, et al. J Bacteriol, 1992 Aug. PMID 1629153, Free PMC Article
  5. The purification and properties of formate dehydrogenase and nitrate reductase from Escherichia coli. Enoch HG, et al. J Biol Chem, 1975 Sep 10. PMID 1099093

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables electron transfer activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
  
enables formate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables formate dehydrogenase (quinone) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables formate dehydrogenase (quinone) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables heme binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaerobic electron transport chain NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in anaerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within anaerobic respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular respiration IEA
Inferred from Electronic Annotation
more info
  
involved_in formate oxidation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within formate oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in formate oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in heme oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in respiratory electron transport chain IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of formate dehydrogenase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of formate dehydrogenase complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of formate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
  
part_of formate dehydrogenase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
formate dehydrogenase N subunit gamma
NP_415993.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1551338..1551991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415993.1 formate dehydrogenase N subunit gamma [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415993.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AA90AFC2
    Conserved Domains (1) summary
    PRK10179
    Location:1 → 217
    PRK10179; formate dehydrogenase-N subunit gamma; Provisional
Nucleotide Protein
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