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ydiB quinate/shikimate dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946200, updated on 4-Apr-2024

Summary

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Gene symbol
ydiB
Gene description
quinate/shikimate dehydrogenase
Primary source
ASAP:ABE-0005651
Locus tag
b1692
See related
ECOCYC:EG11234
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1690
Summary
YdiB is paralogous to AroE. [More information is available at EcoGene: EG11234]. The ydiB gene encodes a quinate/shikimate dehydrogenase . [More information is available at EcoCyc: EG11234].
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Genomic context

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Sequence:
NC_000913.3 (1773789..1774655)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative exporter YdiM Neighboring gene putative transporter YdiN Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acetate-CoA transferase YdiF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase. Benach J, et al. J Biol Chem, 2003 May 23. PMID 12624088
  2. The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Duncan K, et al. Biochem J, 1986 Sep 1. PMID 3541912, Free PMC Article
  3. Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities. Michel G, et al. J Biol Chem, 2003 May 23. PMID 12637497
  4. Hydroaromatic equilibration during biosynthesis of shikimic acid. Knop DR, et al. J Am Chem Soc, 2001 Oct 24. PMID 11603966
  5. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables quinate 3-dehydrogenase (NAD+) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables quinate 3-dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables quinate 3-dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
enables shikimate 3-dehydrogenase (NAD+) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables shikimate 3-dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables shikimate 3-dehydrogenase (NADP+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables shikimate 3-dehydrogenase (NADP+) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables shikimate 3-dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in aromatic amino acid family biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in chorismate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chorismate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in shikimate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
quinate/shikimate dehydrogenase
NP_416207.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1773789..1774655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416207.1 quinate/shikimate dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416207.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AJI6, A0AA87BCP3
    Conserved Domains (1) summary
    PRK12749
    Location:1 → 288
    PRK12749; quinate/shikimate dehydrogenase; Reviewed
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials