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atoE short chain fatty acid transporter [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946721, updated on 23-Nov-2023

Summary

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Gene symbol
atoE
Gene description
short chain fatty acid transporter
Primary source
ASAP:ABE-0007353
Locus tag
b2223
See related
ECOCYC:EG11671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2216
Summary
IT (Ion Transporter) superfamily (Prakash, 2003). [More information is available at EcoGene: EG11671]. AtoE is an inner membrane protein with ten predicted transmembrane domains. [More information is available at EcoCyc: EG11671].
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Genomic context

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Sequence:
NC_000913.3 (2324756..2326078)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene sensor histidine kinase AtoS Neighboring gene DNA-binding transcriptional activator/ornithine decarboxylase inhibitor AtoC Neighboring gene acetyl-CoA:acetoacetyl-CoA transferase subunit alpha Neighboring gene acetyl-CoA:acetoacetyl-CoA transferase subunit beta Neighboring gene acetyl-CoA acetyltransferase Neighboring gene DUF2135 domain-containing protein YfaP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and molecular characterization of the genes involved in short-chain fatty acid degradation in Escherichia coli: the ato system. Jenkins LS, et al. J Bacteriol, 1987 Jan. PMID 3025185, Free PMC Article
  2. Regulation of the ato operon by the atoC gene in Escherichia coli. Jenkins LS, et al. J Bacteriol, 1987 May. PMID 2883171, Free PMC Article
  3. The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator. Lioliou EE, et al. Microb Cell Fact, 2004 Jun 16. PMID 15200682, Free PMC Article
  4. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
  5. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
short chain fatty acid transporter

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2324756..2326078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416727.1 short chain fatty acid transporter [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416727.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376Y5N9, A0A5B9AI86
    Conserved Domains (1) summary
    pfam02667
    Location:1 → 440
    SCFA_trans; Short chain fatty acid transporter
Nucleotide Protein
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