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nudI pyrimidine deoxynucleotide diphosphatase NudI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946740, updated on 4-Apr-2024

Summary

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Gene symbol
nudI
Gene description
pyrimidine deoxynucleotide diphosphatase NudI
Primary source
ASAP:ABE-0007449
Locus tag
b2251
See related
ECOCYC:G7164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2244; yfaO
Summary
Nudix hydrolase. [More information is available at EcoGene: EG13275]. The nudI gene product is a member of the Nudix hydrolase superfamily of nucleoside diphosphatases. [More information is available at EcoCyc: G7164].
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Genomic context

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Sequence:
NC_000913.3 (2364554..2364979)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene IPR008135 CinA family protein YfaY Neighboring gene putative porin YfaZ Neighboring gene putative lipopolysaccharide core heptose(II)-phosphate phosphatase Neighboring gene UDP-4-amino-4-deoxy-L-arabinose aminotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression, crystallization and preliminary X-ray crystallographic analysis of Nudix hydrolase Orf141 from Escherichia coli K-1. Jung J, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2007 Sep 1. PMID 17768363, Free PMC Article
  2. Three new Nudix hydrolases from Escherichia coli. Xu W, et al. J Biol Chem, 2006 Aug 11. PMID 16766526
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. The Nudix hydrolase superfamily. McLennan AG. Cell Mol Life Sci, 2006 Jan. PMID 16378245
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables dCTP diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dCTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables dTTP diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dTTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables dUTP diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dUTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pyrimidine deoxynucleotide diphosphatase NudI
NP_416754.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2364554..2364979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416754.1 pyrimidine deoxynucleotide diphosphatase NudI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416754.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A827XQX4
    Conserved Domains (1) summary
    PRK15472
    Location:1 → 141
    PRK15472; nucleoside triphosphatase NudI; Provisional
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases