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selD selenide, water dikinase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946768, updated on 2-May-2024

Summary

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Gene symbol
selD
Gene description
selenide, water dikinase
Primary source
ASAP:ABE-0005872
Locus tag
b1764
See related
ECOCYC:EG10943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1762; fdhB
Summary
Selenide, water dikinase, the selD gene product, catalyzes the reaction that produces the selenium donor compound, selenophosphate. [More information is available at EcoCyc: EG10943].
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Genomic context

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Sequence:
NC_000913.3 (1846965..1848008, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1266 domain-containing protein YnjI Neighboring gene DNA topoisomerase III Neighboring gene putative oxidoreductase YdjA Neighboring gene protease IV, a signal peptide peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural insights into the catalytic mechanism of Escherichia coli selenophosphate synthetase. Noinaj N, et al. J Bacteriol, 2012 Jan. PMID 22081394, Free PMC Article
  2. Mechanistic insights revealed through characterization of a novel chromophore in selenophosphate synthetase from Escherichia coli. Wolfe MD. IUBMB Life, 2003 Dec. PMID 14769005
  3. Biosynthesis of selenophosphate. Lacourciere GM. Biofactors, 1999. PMID 10609888
  4. Catalytic properties of selenophosphate synthetases: comparison of the selenocysteine-containing enzyme from Haemophilus influenzae with the corresponding cysteine-containing enzyme from Escherichia coli. Lacourciere GM, et al. Proc Natl Acad Sci U S A, 1999 Jan 5. PMID 9874769, Free PMC Article
  5. Bacterial selenocysteine synthase--structural and functional properties. Tormay P, et al. Eur J Biochem, 1998 Jun 15. PMID 9688279

See all (33) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables selenide, water dikinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables selenide, water dikinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables selenide, water dikinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in selenocysteine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in selenocysteine biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in selenocysteine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within selenocysteine biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within tRNA seleno-modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
selenide, water dikinase
NP_416278.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1846965..1848008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416278.1 selenide, water dikinase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416278.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L7CBK9, A0AA87JVS3
    Conserved Domains (1) summary
    PRK00943
    Location:1 → 347
    PRK00943; selenide, water dikinase SelD
Nucleotide Protein
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