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dsdA D-serine ammonia-lyase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946837, updated on 23-Nov-2023

Summary

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Gene symbol
dsdA
Gene description
D-serine ammonia-lyase
Primary source
ASAP:ABE-0007804
Locus tag
b2366
See related
ECOCYC:EG10249
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2362
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Genomic context

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Sequence:
NC_000913.3 (2479202..2480530)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator DsdC Neighboring gene D-serine transporter Neighboring gene tripartite efflux pump membrane subunit EmrY Neighboring gene tripartite efflux pump membrane fusion protein EmrK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metagenome resource for D-serine utilization in a DsdA-disrupted Escherichia coli. Lim MY, et al. J Microbiol Biotechnol, 2011 Apr. PMID 21532320
  2. The dsdA gene from Escherichia coli provides a novel selectable marker for plant transformation. Erikson O, et al. Plant Mol Biol, 2005 Feb. PMID 15830131
  3. GENETIC STRUCTURE OF THE D-SERINE DEAMINASE SYSTEM OF ESCHERICHIA COLI. MCFALL E. J Mol Biol, 1964 Sep. PMID 14216615
  4. Sequence of Escherichia coli D-serine dehydratase. Location of the pyridoxal-phosphate binding site. Schiltz E, et al. FEBS Lett, 1981 Nov 2. PMID 9222324
  5. DNA sequences of the D-serine deaminase control region and N-terminal portion of the structural gene. McFall E, et al. J Bacteriol, 1983 Jun. PMID 6343359, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Two alternative genetic resources for D-serine dehydratase were identified in DsdA-disrupted strain.
    Title: Metagenome resource for D-serine utilization in a DsdA-disrupted Escherichia coli.
  2. N-terminus verified by Edman degradation on complete protein
    Title: Sequence of Escherichia coli D-serine dehydratase. Location of the pyridoxal-phosphate binding site.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables D-serine ammonia-lyase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables D-serine ammonia-lyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables D-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydro-lyase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydro-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in D-serine catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within D-serine catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within D-serine catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within D-serine metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within detoxification of nitrogen compound IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in isoleucine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
D-serine ammonia-lyase
NP_416867.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2479202..2480530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416867.1 D-serine ammonia-lyase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416867.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A827XLV1, A0A8S7EK81
    Conserved Domains (1) summary
    PRK02991
    Location:6 → 442
    PRK02991; D-serine dehydratase; Provisional
Nucleotide Protein
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