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rfbD dTDP-4-dehydrorhamnose reductase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947117, updated on 11-Apr-2024

Summary

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Gene symbol
rfbD
Gene description
dTDP-4-dehydrorhamnose reductase
Primary source
ASAP:ABE-0006764
Locus tag
b2040
See related
ECOCYC:EG12411
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2034; rmlD
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Genomic context

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Sequence:
NC_000913.3 (2111077..2111976, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene polyisoprenol-linked O16-antigen repeat unit flippase Neighboring gene dTDP-4-dehydrorhamnose 3,5-epimerase Neighboring gene glucose-1-phosphate thymidylyltransferase 1 Neighboring gene dTDP-glucose 4,6-dehydratase 1 Neighboring gene UTP:glucose-1-phosphate uridylyltransferase, low activity Neighboring gene putative colanic acid biosynthesis protein WcaM

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular typing of Escherichia coli strains isolated from food in Casablanca (Morocco). Badri S, et al. Cell Mol Biol (Noisy-le-grand), 2009 Jun 15. PMID 19656466
  2. Function of the rfb gene cluster and the rfe gene in the synthesis of O antigen by Shigella dysenteriae 1. Klena JD, et al. Mol Microbiol, 1993 Jul. PMID 7692219
  3. Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111. Bastin DA, et al. Gene, 1995 Oct 16. PMID 7590310
  4. Structure of the O antigen of Escherichia coli K-12 and the sequence of its rfb gene cluster. Stevenson G, et al. J Bacteriol, 1994 Jul. PMID 7517391, Free PMC Article
  5. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables dTDP-4-dehydrorhamnose reductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dTDP-4-dehydrorhamnose reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables dTDP-4-dehydrorhamnose reductase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in O antigen biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in dTDP-rhamnose biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in dTDP-rhamnose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in extracellular polysaccharide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in extracellular polysaccharide biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in lipopolysaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipopolysaccharide biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
dTDP-4-dehydrorhamnose reductase
NP_416544.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2111077..2111976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416544.1 dTDP-4-dehydrorhamnose reductase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416544.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q3IA88
    Conserved Domains (1) summary
    PRK09987
    Location:1 → 299
    PRK09987; dTDP-4-dehydrorhamnose reductase; Provisional
Nucleotide Protein
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Gene LinkOut

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