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garR tartronate semialdehyde reductase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947631, updated on 4-Feb-2024

Summary

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Gene symbol
garR
Gene description
tartronate semialdehyde reductase
Primary source
ASAP:ABE-0010273
Locus tag
b3125
See related
ECOCYC:EG11176
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3113; yhaE
Summary
Tartronate semialdehyde reductase (GarR) catalyzes the reduction of tatronate semialdehyde to yield glycerate . [More information is available at EcoCyc: EG11176].
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Genomic context

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Sequence:
NC_000913.3 (3271867..3272751, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene glycerate 2-kinase 1 Neighboring gene alpha-dehydro-beta-deoxy-D-glucarate aldolase Neighboring gene galactarate/D-glucarate transporter GarP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Precise mapping of the rnpB gene encoding the RNA component of RNase P in Escherichia coli K-12. Komine Y, et al. J Bacteriol, 1991 Mar. PMID 1705543, Free PMC Article
  2. Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. Lundberg U, et al. RNA, 1995 May. PMID 7489504, Free PMC Article
  3. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
  4. A common regulator for the operons encoding the enzymes involved in D-galactarate, D-glucarate, and D-glycerate utilization in Escherichia coli. Monterrubio R, et al. J Bacteriol, 2000 May. PMID 10762278, Free PMC Article
  5. Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli. Hubbard BK, et al. Biochemistry, 1998 Oct 13. PMID 9772162

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2-hydroxy-3-oxopropionate reductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 2-hydroxy-3-oxopropionate reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables NAD binding IEA
Inferred from Electronic Annotation
more info
  
enables NADP binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within D-glucarate catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within galactarate catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in galactarate catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glyoxylate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in organic acid catabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tartronate semialdehyde reductase
NP_417594.3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3271867..3272751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417594.3 tartronate semialdehyde reductase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417594.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A828TWK8, D6JF04
    Conserved Domains (1) summary
    PRK11559
    Location:1 → 294
    garR; tartronate semialdehyde reductase; Provisional
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases