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dppD dipeptide ABC transporter ATP binding subunit DppD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948065, updated on 4-Feb-2024

Summary

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Gene symbol
dppD
Gene description
dipeptide ABC transporter ATP binding subunit DppD
Primary source
ASAP:ABE-0011566
Locus tag
b3541
See related
ECOCYC:EG12627
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3528
Summary
Escherichia coli does not normally use exogeneous heme, but heme can be utilized if a foreign OM heme receptor is expressed in Escherichia coli (Letoffe, 2006). [More information is available at EcoGene: EG12627]. DppD is an ATP-binding component of the dipeptide ABC transporter. [More information is available at EcoCyc: EG12627].
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Genomic context

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Sequence:
NC_000913.3 (3702865..3703848, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative transporter YhjV Neighboring gene dipeptide ABC transporter ATP binding subunit DppF Neighboring gene dipeptide ABC transporter membrane subunit DppC Neighboring gene dipeptide ABC transporter membrane subunit DppB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PEPTIDE UTILIZATION IN ESCHERICHIA COLI. GILVARG C, et al. J Biol Chem, 1965 Jul. PMID 14342337
  2. Structural basis for recognition of dipeptides by peptide transporters. Payne JW, et al. Arch Biochem Biophys, 2000 Dec 1. PMID 11147841
  3. Crystal structure of the dipeptide binding protein from Escherichia coli involved in active transport and chemotaxis. Dunten P, et al. Protein Sci, 1995 Nov. PMID 8563629, Free PMC Article
  4. 2 A resolution structure of DppA, a periplasmic dipeptide transport/chemosensory receptor. Nickitenko AV, et al. Biochemistry, 1995 Dec 26. PMID 8527431
  5. Crystallization and preliminary X-ray analysis of the periplasmic dipeptide binding protein from Escherichia coli. Dunten PW, et al. J Mol Biol, 1993 May 5. PMID 8496961

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables dipeptide transmembrane transporter activity RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
enables heme transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within dipeptide transmembrane transport RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
involved_in dipeptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in heme transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dipeptide ABC transporter ATP binding subunit DppD
NP_417998.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3702865..3703848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417998.1 dipeptide ABC transporter ATP binding subunit DppD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417998.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A895NNU3
    Conserved Domains (1) summary
    PRK11022
    Location:1 → 327
    dppD; dipeptide transporter ATP-binding subunit; Provisional
Nucleotide Protein
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