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yidK putative transporter YidK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948185, updated on 2-May-2024

Summary

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Gene symbol
yidK
Gene description
putative transporter YidK
Primary source
ASAP:ABE-0012026
Locus tag
b3679
See related
ECOCYC:EG11706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3670
Summary
The YidK protein is an uncharacterised member of the SSS superfamily of sodium dependent solute transporters . [More information is available at EcoCyc: EG11706].
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Genomic context

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Sequence:
NC_000913.3 (3858401..3860116, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene inner membrane protein YidG Neighboring gene DUF202 domain-containing inner membrane protein YidH Neighboring gene putative inner membrane protein YidI Neighboring gene putative sulfatase/phosphatase YidJ Neighboring gene putative DNA-binding transcriptional regulator YidL Neighboring gene pseudo Neighboring gene putative PTS enzyme II component GlvB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomewide landscape of gene-metabolome associations in Escherichia coli. Fuhrer T, et al. Mol Syst Biol, 2017 Jan 16. PMID 28093455, Free PMC Article
  2. First evidences for a third sulfatase maturation system in prokaryotes from E. coli aslB and ydeM deletion mutants. Benjdia A, et al. FEBS Lett, 2007 Mar 6. PMID 17303125
  3. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Burland V, et al. Genomics, 1993 Jun. PMID 7686882
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables glucose:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables symporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within galactose metabolic process RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
involved_in glucose transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YidK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3858401..3860116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418135.1 putative transporter YidK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418135.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AA87K089
    Conserved Domains (1) summary
    COG4146
    Location:1 → 571
    YidK; Uncharacterized membrane permease YidK, sodium:solute symporter family [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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