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allD ureidoglycolate dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948342, updated on 4-Feb-2024

Summary

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Gene symbol
allD
Gene description
ureidoglycolate dehydrogenase
Primary source
ASAP:ABE-0001780
Locus tag
b0517
See related
ECOCYC:G6286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0510; glxB8; ylbC
Summary
Ureidoglycolate dehydrogenase catalyzes the oxidation of ureidoglycolate to oxalurate, a final step in the assimilation of allantoin . [More information is available at EcoCyc: G6286].
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Genomic context

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Sequence:
NC_000913.3 (545314..546363, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene (S)-ureidoglycine aminohydrolase Neighboring gene allantoate amidohydrolase Neighboring gene putative oxamate carbamoyltransferase FdrA Neighboring gene DUF1116 domain-containing protein YlbE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional insights into (S)-ureidoglycolate dehydrogenase, a metabolic branch point enzyme in nitrogen utilization. Kim MI, et al. PLoS One, 2012. PMID 23284870, Free PMC Article
  2. Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS. Rintoul MR, et al. J Mol Biol, 2002 Dec 6. PMID 12460564
  3. Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli. Cusa E, et al. J Bacteriol, 1999 Dec. PMID 10601204, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables ureidoglycolate dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within allantoin assimilation pathway IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in allantoin catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in purine nucleobase metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ureidoglycolate dehydrogenase
NP_415050.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    545314..546363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415050.1 ureidoglycolate dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415050.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F4UZ98
    Conserved Domains (1) summary
    PRK15025
    Location:1 → 349
    PRK15025; ureidoglycolate dehydrogenase; Provisional
Nucleotide Protein
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