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fdoI formate dehydrogenase O subunit gamma [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948383, updated on 23-Nov-2023

Summary

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Gene symbol
fdoI
Gene description
formate dehydrogenase O subunit gamma
Primary source
ASAP:ABE-0012705
Locus tag
b3892
See related
ECOCYC:EG11856
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3885
Summary
Also known as FDH-Z. [More information is available at EcoGene: EG11856]. By similarity to the paralogous subunit of formate dehydrogenase-N, FdnI, FdoI is the heme-containing membrane subunit of formate dehydrogenase-O. [More information is available at EcoCyc: EG11856].
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Genomic context

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Sequence:
NC_000913.3 (4081225..4081860, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YiiE Neighboring gene protein YiiF Neighboring gene formate dehydrogenase formation protein Neighboring gene formate dehydrogenase O subunit beta Neighboring gene formate dehydrogenase O subunit alpha Neighboring gene sulfurtransferase for molybdenum cofactor sulfuration

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
  2. The hydrogenases and formate dehydrogenases of Escherichia coli. Sawers G. Antonie Van Leeuwenhoek, 1994. PMID 7747941
  3. Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli. Benoit S, et al. J Bacteriol, 1998 Dec. PMID 9852007, Free PMC Article
  4. A second phenazine methosulphate-linked formate dehydrogenase isoenzyme in Escherichia coli. Pommier J, et al. Biochim Biophys Acta, 1992 Jun 30. PMID 1504073
  5. Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase. Abaibou H, et al. J Bacteriol, 1995 Dec. PMID 8522521, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
  
enables formate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables formate dehydrogenase (quinone) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in anaerobic electron transport chain NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in anaerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cellular respiration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in formate oxidation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within formate oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in formate oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in heme oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in respiratory electron transport chain IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of formate dehydrogenase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of formate dehydrogenase complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of formate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
  
part_of formate dehydrogenase complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
formate dehydrogenase O subunit gamma
NP_418328.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4081225..4081860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418328.1 formate dehydrogenase O subunit gamma [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418328.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377DZJ2
    Conserved Domains (1) summary
    PRK10639
    Location:1 → 211
    PRK10639; formate dehydrogenase cytochrome b556 subunit
Nucleotide Protein
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