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fdoH formate dehydrogenase O subunit beta [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948395, updated on 27-Nov-2023

Summary

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Gene symbol
fdoH
Gene description
formate dehydrogenase O subunit beta
Primary source
ASAP:ABE-0012708
Locus tag
b3893
See related
ECOCYC:EG11857
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3886
Summary
Also known as FDH-Z. [More information is available at EcoGene: EG11857]. By similarity to the paralogous subunit of formate dehydrogenase-N, FdnH, FdoH is thought to contain four [4Fe-4S] clusters and one C-terminal transmembrane helix . [More information is available at EcoCyc: EG11857].
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Genomic context

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Sequence:
NC_000913.3 (4081857..4082759, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YiiF Neighboring gene formate dehydrogenase formation protein Neighboring gene formate dehydrogenase O subunit gamma Neighboring gene formate dehydrogenase O subunit alpha Neighboring gene sulfurtransferase for molybdenum cofactor sulfuration

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of formate dehydrogenases in stationary phase oxidative stress tolerance in Escherichia coli. Iwadate Y, et al. FEMS Microbiol Lett, 2017 Nov 1. PMID 29044403
  2. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
  3. A subset of bacterial inner membrane proteins integrated by the twin-arginine translocase. Hatzixanthis K, et al. Mol Microbiol, 2003 Sep. PMID 12940994
  4. The hydrogenases and formate dehydrogenases of Escherichia coli. Sawers G. Antonie Van Leeuwenhoek, 1994. PMID 7747941
  5. Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli. Benoit S, et al. J Bacteriol, 1998 Dec. PMID 9852007, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables formate dehydrogenase (quinone) activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anaerobic electron transport chain NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in cellular respiration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within formate oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in formate oxidation IEA
Inferred from Electronic Annotation
more info
  
involved_in formate oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in heme oxidation NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of formate dehydrogenase complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of formate dehydrogenase complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane HDA PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
formate dehydrogenase O subunit beta
NP_418329.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4081857..4082759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418329.1 formate dehydrogenase O subunit beta [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418329.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AMJ6
    Conserved Domains (1) summary
    TIGR01582
    Location:7 → 288
    FDH-beta; formate dehydrogenase, beta subunit, Fe-S containing
Nucleotide Protein
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