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alsA D-allose ABC transporter ATP binding subunit [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948593, updated on 11-Apr-2024

Summary

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Gene symbol
alsA
Gene description
D-allose ABC transporter ATP binding subunit
Primary source
ASAP:ABE-0013394
Locus tag
b4087
See related
ECOCYC:EG11959
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4080; yjcW
Summary
AlsA is the ATP-binding component of the allose ABC transporter. [More information is available at EcoCyc: EG11959].
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Genomic context

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Sequence:
NC_000913.3 (4309448..4310980, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene linear primary-alkylsulfatase Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter periplasmic binding protein Neighboring gene DNA-binding transcriptional repressor AlsR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8 A resolution. Chaudhuri BN, et al. J Mol Biol, 1999 Mar 12. PMID 10064713
  2. Sequence relationships between integral inner membrane proteins of binding protein-dependent transport systems: evolution by recurrent gene duplications. Saurin W, et al. Protein Sci, 1994 Feb. PMID 8003968, Free PMC Article
  3. D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose. Poulsen TS, et al. J Bacteriol, 1999 Nov. PMID 10559180, Free PMC Article
  4. The D-allose operon of Escherichia coli K-12. Kim C, et al. J Bacteriol, 1997 Dec. PMID 9401019, Free PMC Article
  5. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ABC-type D-ribose transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISM
Inferred from Sequence Model
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in D-allose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in D-ribose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in organic substance transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
D-allose ABC transporter ATP binding subunit
NP_418511.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4309448..4310980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418511.1 D-allose ABC transporter ATP binding subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418511.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L7A0S5
    Conserved Domains (1) summary
    PRK09700
    Location:1 → 510
    PRK09700; D-allose ABC transporter ATP-binding protein AlsA
Nucleotide Protein
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