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alsB D-allose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948604, updated on 11-Apr-2024

Summary

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Gene symbol
alsB
Gene description
D-allose ABC transporter periplasmic binding protein
Primary source
ASAP:ABE-0013398
Locus tag
b4088
See related
ECOCYC:EG12458
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4081; yjcX
Summary
First 23 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12458]. AlsB is the periplasmic substrate-binding component of the allose ABC transporter. [More information is available at EcoCyc: EG12458].
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Genomic context

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Sequence:
NC_000913.3 (4311107..4312042, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter ATP binding subunit Neighboring gene DNA-binding transcriptional repressor AlsR Neighboring gene allose-6-phosphate isomerase/ribose-5-phosphate isomerase B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hinge-bending motion of D-allose-binding protein from Escherichia coli: three open conformations. Magnusson U, et al. J Biol Chem, 2002 Apr 19. PMID 11825912
  2. Structure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8 A resolution. Chaudhuri BN, et al. J Mol Biol, 1999 Mar 12. PMID 10064713
  3. Sequence relationships between integral inner membrane proteins of binding protein-dependent transport systems: evolution by recurrent gene duplications. Saurin W, et al. Protein Sci, 1994 Feb. PMID 8003968, Free PMC Article
  4. D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose. Poulsen TS, et al. J Bacteriol, 1999 Nov. PMID 10559180, Free PMC Article
  5. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables monosaccharide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-allose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in D-ribose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in organic substance transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane HDA PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
D-allose ABC transporter periplasmic binding protein
NP_418512.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4311107..4312042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418512.1 D-allose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418512.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L9A9V5, A0A826NZ85
    Conserved Domains (1) summary
    PRK09701
    Location:1 → 311
    PRK09701; D-allose transporter substrate-binding protein
Nucleotide Protein
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