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ytfQ galactofuranose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948746, updated on 11-Apr-2024

Summary

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Gene symbol
ytfQ
Gene description
galactofuranose ABC transporter periplasmic binding protein
Primary source
ASAP:ABE-0013829
Locus tag
b4227
See related
ECOCYC:EG12517
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4223
Summary
Putative YjfF-YtfTRQ ABC transport system. [More information is available at EcoGene: EG12517]. YtfQ is a periplasmic binding component of a predicted sugar ABC transporter. [More information is available at EcoCyc: EG12517].
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Genomic context

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Sequence:
NC_000913.3 (4449962..4450918)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system Neighboring gene endoribonuclease toxin ChpB Neighboring gene inorganic pyrophosphatase Neighboring gene galactofuranose ABC transporter putative ATP binding subunit Neighboring gene galactofuranose ABC transporter putative membrane subunit YtfT Neighboring gene galactofuranose ABC transporter putative membrane subunit YjtF

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome analysis to assess physiological changes in Escherichia coli grown under glucose-limited fed-batch conditions. Raman B, et al. Biotechnol Bioeng, 2005 Nov 5. PMID 16180237
  2. The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner. Vertommen D, et al. Mol Microbiol, 2008 Jan. PMID 18036138, Free PMC Article
  3. Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. Horler RS, et al. J Biol Chem, 2009 Nov 6. PMID 19744923, Free PMC Article
  4. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104
  5. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables galactose binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within galactose transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in hexose import across plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in organic substance transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in outer membrane-bounded periplasmic space RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactofuranose ABC transporter periplasmic binding protein
NP_418648.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4449962..4450918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418648.1 galactofuranose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418648.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A793CAV9
    Conserved Domains (1) summary
    cd06309
    Location:25 → 312
    PBP1_galactofuranose_YtfQ-like; periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems
Nucleotide Protein
Heading Accession and Version

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