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lgoD L-galactonate oxidoreductase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948883, updated on 11-Apr-2024

Summary

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Gene symbol
lgoD
Gene description
L-galactonate oxidoreductase
Primary source
ASAP:ABE-0014294
Locus tag
b4358
See related
ECOCYC:G7945
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4348; yjjN
Summary
AFMB Structural Genomics target Number 62 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12590]. YjjN is a predicted L-galactonate oxidoreductase that is required for growth on L-galactonate as the sole carbon source under high-throughput growth conditions with limited aeration . [More information is available at EcoCyc: G7945].
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Genomic context

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Sequence:
NC_000913.3 (4595990..4597012)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene galactonate:H(+) symporter Neighboring gene putative DNA-binding transcriptional regulator LgoR Neighboring gene phosphoglycerol transferase I Neighboring gene DUF2501 domain-containing protein YjjA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The pathway for L-galactonate catabolism in Escherichia coli K-12. Cooper RA. FEBS Lett, 1979 Jul 15. PMID 381020
  2. The yjjN of E. coli codes for an L-galactonate dehydrogenase and can be used for quantification of L-galactonate and L-gulonate. Kuivanen J, et al. Appl Biochem Biotechnol, 2014 Aug. PMID 24861318
  3. Systems approach to refining genome annotation. Reed JL, et al. Proc Natl Acad Sci U S A, 2006 Nov 14. PMID 17088549, Free PMC Article
  4. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. Kuznetsova E, et al. FEMS Microbiol Rev, 2005 Apr. PMID 15808744
  5. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within L-galactonate catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
L-galactonate oxidoreductase
NP_418778.4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4595990..4597012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418778.4 L-galactonate oxidoreductase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418778.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D6IHR7
    Conserved Domains (1) summary
    cd08261
    Location:4 → 340
    Zn_ADH7; Alcohol dehydrogenases of the MDR family
Nucleotide Protein
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Other Literature Sources
Molecular Biology Databases