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deoB phosphopentomutase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948910, updated on 23-Nov-2023

Summary

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Gene symbol
deoB
Gene description
phosphopentomutase
Primary source
ASAP:ABE-0014377
Locus tag
b4383
See related
ECOCYC:EG10220
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
drm; ECK4375; thyR; tlr
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Genomic context

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Sequence:
NC_000913.3 (4619603..4620826)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene deoxyribose-phosphate aldolase Neighboring gene thymidine phosphorylase Neighboring gene purine nucleoside phosphorylase Neighboring gene toxin YjjJ

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosphodeoxyribomutase from Escherichia coli. Purification and some properties. Hammer-Jespersen K, et al. Eur J Biochem, 1970 Dec. PMID 4992818
  2. Multiple forms of phosphodeoxyribomutase from Escherichia coli. Physical and chemical characterization. Leer JC, et al. Biochemistry, 1975 Feb 11. PMID 1089430
  3. Thymineless mutants of Escherichia coli with deficiencies in deoxyribomutase and deoxyriboaldolase. Munch-Petersen A. Biochim Biophys Acta, 1968 Jun 18. PMID 4873559
  4. The primary structure of Escherichia coli K12 2-deoxyribose 5-phosphate aldolase. Nucleotide sequence of the deoC gene and the amino acid sequence of the enzyme. Valentin-Hansen P, et al. Eur J Biochem, 1982 Jul. PMID 6749498
  5. The internal regulated promoter of the deo operon of Escherichia coli K-12. Valentin-Hansen P, et al. Nucleic Acids Res, 1984 Jul 11. PMID 6087276, Free PMC Article

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: The internal regulated promoter of the deo operon of Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphopentomutase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphopentomutase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphopentomutase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 5-phosphoribose 1-diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular metabolic compound salvage IEA
Inferred from Electronic Annotation
more info
  
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within deoxyribonucleotide catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in nucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in nucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
phosphopentomutase
NP_418800.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4619603..4620826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418800.1 phosphopentomutase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418800.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A418GHU9
    Conserved Domains (1) summary
    PRK05362
    Location:1 → 407
    PRK05362; phosphopentomutase; Provisional
Nucleotide Protein
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Gene LinkOut

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