Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

Science. 1999 Oct 15;286(5439):531-7. doi: 10.1126/science.286.5439.531.

Abstract

Although cancer classification has improved over the past 30 years, there has been no general approach for identifying new cancer classes (class discovery) or for assigning tumors to known classes (class prediction). Here, a generic approach to cancer classification based on gene expression monitoring by DNA microarrays is described and applied to human acute leukemias as a test case. A class discovery procedure automatically discovered the distinction between acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) without previous knowledge of these classes. An automatically derived class predictor was able to determine the class of new leukemia cases. The results demonstrate the feasibility of cancer classification based solely on gene expression monitoring and suggest a general strategy for discovering and predicting cancer classes for other types of cancer, independent of previous biological knowledge.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acute Disease
  • Antineoplastic Combined Chemotherapy Protocols / therapeutic use
  • Cell Adhesion / genetics
  • Cell Cycle / genetics
  • Gene Expression Profiling*
  • Homeodomain Proteins / genetics
  • Humans
  • Leukemia, Myeloid / classification*
  • Leukemia, Myeloid / drug therapy
  • Leukemia, Myeloid / genetics*
  • Neoplasm Proteins / genetics
  • Neoplasms / classification
  • Neoplasms / genetics
  • Oligonucleotide Array Sequence Analysis
  • Oncogenes
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / classification*
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / drug therapy
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / genetics*
  • Predictive Value of Tests
  • Reproducibility of Results
  • Treatment Outcome

Substances

  • Homeodomain Proteins
  • Neoplasm Proteins
  • homeobox protein HOXA9