Nucleotide sequence, transcription map, and mutation analysis of the 13q14 chromosomal region deleted in B-cell chronic lymphocytic leukemia

Blood. 2001 Apr 1;97(7):2098-104. doi: 10.1182/blood.v97.7.2098.

Abstract

Deletions of the 13q14 chromosome region are associated with B-cell chronic lymphocytic leukemia (B-CLL) and several other types of cancer, suggesting the presence of a tumor suppressor gene. In previous studies the minimal region of deletion (MDR) was mapped to a less than 300-kilobase (kb) interval bordered by the markers 173a12-82 and 138G4/1.3R. For the identification of the putative tumor suppressor gene, the entire MDR (approximately 347 kb) has been sequenced, and transcribed regions have been identified by exon trapping, EST-based full-length complementary DNA cloning, database homology searches, and computer-assisted gene prediction analyses. The MDR contains 2 pseudogenes and 3 transcribed genes: CAR, encoding a putative RING-finger containing protein; 1B4/Leu2, generating noncoding transcripts; and EST70/Leu1, probably representing another noncoding gene (longest open reading frame of 78 codons). These genes have been sequenced in 20 B-CLL cases with 13q14 hemizygous deletion, and no mutations were found. Moreover, no somatic variants were found in the entire MDR analyzed for nucleotide substitutions by a combination of direct sequencing and fluorescence-assisted mismatch analysis in 5 B-CLL cases displaying 13q14-monoallelic deletion. The nondeleted allele of the CAR and EST70/Leu1 genes was expressed in B-CLL specimens, including those with monoallelic loss, whereas no expression of 1B4/Leu2 was detectable in B-CLL, regardless of the 13q14 status. These results indicate that allelic loss and mutation of a gene within the MDR is an unlikely pathogenetic mechanism for B-CLL. However, haplo-insufficiency of one of the identified genes may contribute to tumorigenesis. (Blood. 2001;97:2098-2104)

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Transformation, Neoplastic / genetics
  • Chromosome Mapping
  • Chromosomes, Human, Pair 13 / genetics*
  • Chromosomes, Human, Pair 13 / ultrastructure
  • DNA Mutational Analysis
  • DNA, Complementary / genetics
  • DNA, Neoplasm / genetics*
  • Expressed Sequence Tags
  • Gene Expression Regulation, Leukemic*
  • Genes, Tumor Suppressor
  • Humans
  • Leukemia, Lymphocytic, Chronic, B-Cell / genetics*
  • Mice
  • Molecular Sequence Data
  • Proteins / genetics
  • Pseudogenes
  • RNA, Long Noncoding
  • RNA, Messenger / biosynthesis
  • RNA, Messenger / genetics
  • RNA, Neoplasm / biosynthesis
  • RNA, Neoplasm / genetics
  • Sequence Deletion
  • Transcription, Genetic
  • Transferases
  • Tumor Suppressor Proteins

Substances

  • DLEU1 lncRNA, human
  • DLEU2 lncRNA, human
  • DNA, Complementary
  • DNA, Neoplasm
  • Proteins
  • RNA, Long Noncoding
  • RNA, Messenger
  • RNA, Neoplasm
  • Tumor Suppressor Proteins
  • Dleu2 protein, mouse
  • Transferases

Associated data

  • GENBANK/AF272953
  • GENBANK/AF279658
  • GENBANK/AF279659
  • GENBANK/AF279660