MELTING, computing the melting temperature of nucleic acid duplex

Bioinformatics. 2001 Dec;17(12):1226-7. doi: 10.1093/bioinformatics/17.12.1226.

Abstract

MELTING computes the enthalpy and entropy of an oligonucleotide duplex helix-coil transition, and then its melting temperature. The program uses the method of nearest-neighbours. The set of thermodynamic parameters can be easily customized. The program provides several correction methods for the concentration of salt. MELTING is a free program, available at no cost and open-source. Perl scripts are provided to show how MELTING can be used to construct more ambitious programs.

Availability: MELTING is available for several platforms (http://www.pasteur.fr/recherche/unites/neubiomol/meltinghome.html) and is accessible via a www server (http://bioweb.pasteur.fr/seqanal/interfaces/melting.html).

Contact: nl223@cus.cam.ac.uk

MeSH terms

  • Mathematical Computing
  • Nucleic Acids / chemistry*
  • Software*
  • Temperature
  • Thermodynamics

Substances

  • Nucleic Acids