Crystallization of diaminopimelate decarboxylase from Escherichia coli, a stereospecific D-amino-acid decarboxylase

Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3):549-52. doi: 10.1107/s0907444902000148. Epub 2002 Feb 21.

Abstract

The final step in lysine biosynthesis in bacteria, the conversion of meso-diaminopimelate to L-lysine, is catalyzed by the only known D-amino-acid decarboxylase, diaminopimelate decarboxylase (DDC). The Escherichia coli DDC has been cloned, overexpressed in E. coli with a carboxy-terminal polyhistidine purification tag and crystallized from lithium sulfate. The protein is intensely yellow, owing to the pyridoxal-5'-phosphate cofactor, and is enzymatically active. Large well ordered crystals, belonging to space group P6(1)22 with unit-cell parameters a = b = 98.6, c = 177 A, make high-resolution X-ray diffraction studies possible to characterize the residues important in stereospecific decarboxylation and reprotonation during catalytic turnover.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins*
  • Carboxy-Lyases / chemistry*
  • Carboxy-Lyases / genetics
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • Decarboxylation
  • Escherichia coli / chemistry
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Protein Conformation

Substances

  • Bacterial Proteins
  • Carboxy-Lyases
  • LysA protein, Bacteria
  • diaminopimelic acid decarboxylase