Post-transfer editing in vitro and in vivo by the beta subunit of phenylalanyl-tRNA synthetase

EMBO J. 2004 Nov 24;23(23):4639-48. doi: 10.1038/sj.emboj.7600474. Epub 2004 Nov 4.

Abstract

Translation of the genetic code requires attachment of tRNAs to their cognate amino acids. Errors during amino-acid activation and tRNA esterification are corrected by aminoacyl-tRNA synthetase-catalyzed editing reactions, as extensively described for aliphatic amino acids. The contribution of editing to aromatic amino-acid discrimination is less well understood. We show that phenylalanyl-tRNA synthetase misactivates tyrosine and that it subsequently corrects such errors through hydrolysis of tyrosyl-adenylate and Tyr-tRNA(Phe). Structural modeling combined with an in vivo genetic screen identified the editing site in the B3/B4 domain of the beta subunit, 40 angstroms from the active site in the alpha subunit. Replacements of residues within the editing site had no effect on Phe-tRNA(Phe) synthesis, but abolished hydrolysis of Tyr-tRNA(Phe) in vitro. Expression of the corresponding mutants in Escherichia coli significantly slowed growth, and changed the activity of a recoded beta-galactosidase variant by misincorporating tyrosine in place of phenylalanine. This loss in aromatic amino-acid discrimination in vivo revealed that editing by phenylalanyl-tRNA synthetase is essential for faithful translation of the genetic code.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Hydrolysis
  • Models, Molecular
  • Mutation
  • Phenylalanine / metabolism
  • Phenylalanine-tRNA Ligase / genetics
  • Phenylalanine-tRNA Ligase / metabolism*
  • Plasmids
  • Protein Biosynthesis*
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • RNA, Transfer, Phe / genetics
  • RNA, Transfer, Phe / metabolism
  • Tyrosine / metabolism
  • Tyrosine-tRNA Ligase / genetics
  • Tyrosine-tRNA Ligase / metabolism

Substances

  • Protein Subunits
  • RNA, Transfer, Phe
  • Tyrosine
  • Phenylalanine
  • Tyrosine-tRNA Ligase
  • Phenylalanine-tRNA Ligase