Kinetic analysis of oxidation of coumarins by human cytochrome P450 2A6

J Biol Chem. 2005 Apr 1;280(13):12279-91. doi: 10.1074/jbc.M411019200. Epub 2005 Jan 22.

Abstract

Human cytochrome P450 (P450) 2A6 catalyzes 7-hydroxylation of coumarin, and the reaction rate is enhanced by cytochrome b5 (b5). 7-Alkoxycoumarins were O-dealkylated and also hydroxylated at the 3-position. Binding of coumarin and 7-hydroxycoumarin to ferric and ferrous P450 2A6 are fast reactions (k(on) approximately 10(6) m(-1) s(-1)), and the k(off) rates range from 5.7 to 36 s(-1) (at 23 degrees C). Reduction of ferric P450 2A6 is rapid (7.5 s(-1)) but only in the presence of coumarin. The reaction of the ferrous P450 2A6 substrate complex with O2 is rapid (k > or = 10(6) m(-1) s(-1)), and the putative Fe2+.O2 complex decayed at a rate of approximately 0.3 s(-1) at 23 degrees C. Some 7-hydroxycoumarin was formed during the oxidation of the ferrous enzyme under these conditions, and the yield was enhanced by b5. Kinetic analyses showed that approximately 1/3 of the reduced b5 was rapidly oxidized in the presence of the Fe2+.O2 complex, implying some electron transfer. High intrinsic and competitive and non-competitive intermolecular kinetic deuterium isotope effects (values 6-10) were measured for O-dealkylation of 7-alkoxycoumarins, indicating the effect of C-H bond strength on rates of product formation. These results support a scheme with many rapid reaction steps, including electron transfers, substrate binding and release at multiple stages, and rapid product release even though the substrate is tightly bound in a small active site. The inherent difficulty of chemistry of substrate oxidation and the lack of proclivity toward a linear pathway leading to product formation explain the inefficiency of the enzyme relative to highly efficient bacterial P450s.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 7-Alkoxycoumarin O-Dealkylase / chemistry
  • Anticoagulants / pharmacology
  • Aryl Hydrocarbon Hydroxylases / chemistry*
  • Aryl Hydrocarbon Hydroxylases / metabolism
  • Binding Sites
  • Binding, Competitive
  • Carbon / chemistry
  • Catalysis
  • Chromatography, High Pressure Liquid
  • Coumarins / chemistry
  • Coumarins / pharmacology*
  • Cytochrome P-450 CYP2A6
  • Cytochromes b5 / chemistry
  • Electron Transport
  • Electrons
  • Humans
  • Hydrogen / chemistry
  • Hydrogen Bonding
  • Hydroxylation
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Mass Spectrometry
  • Mixed Function Oxygenases / chemistry*
  • Mixed Function Oxygenases / metabolism
  • Models, Chemical
  • Oxygen / chemistry
  • Oxygen / metabolism*
  • Protein Binding
  • Protein Structure, Tertiary
  • Spectrophotometry
  • Substrate Specificity
  • Time Factors
  • Ultraviolet Rays

Substances

  • Anticoagulants
  • Coumarins
  • Carbon
  • Hydrogen
  • Cytochromes b5
  • coumarin
  • Mixed Function Oxygenases
  • 7-Alkoxycoumarin O-Dealkylase
  • Aryl Hydrocarbon Hydroxylases
  • Cytochrome P-450 CYP2A6
  • Oxygen