Characterization of CD28, CTLA4, and ICOS polymorphisms in three Brazilian ethnic groups

Hum Immunol. 2005 Jul;66(7):773-6. doi: 10.1016/j.humimm.2005.04.007.

Abstract

Costimulatory molecules CD28, CTLA-4 (cytotoxic T-lymphocyte-associated antigen-4), and ICOS (inducible costimulator) genes lie within the 300-kb chromosome region 2q33. CD28, CTLA-4, and ICOS have been described to be important regulators of T-cell activation. With the objective to study ethnic variations in allelic frequencies and linkage disequilibrium (LD) patterns, we genotyped CD28 intron 3 (+17 T>C), CTLA4 promoter (-319 C>T), CTLA4 exon 1 (+49 A>G), and ICOS 3' UTR (1564 T>C) polymorphisms in white (n = 103), mulatto (n = 97), and black (n = 79) Brazilian healthy individuals. No significant deviations from Hardy-Weinberg equilibrium were found in any of the population samples. A higher frequency of CD28 +17 C allele was detected in white (27%) in comparison with mulatto (15%) and black (13%) (p = 0.005) populations. LD between CD28 +17 C and CTLA4 -319 T alleles was observed in whites (p < 0.0001), mulattos (p = 0.0001), and blacks (p = 0.0002).

MeSH terms

  • 3' Flanking Region / genetics
  • Alleles
  • Antigens, CD
  • Antigens, Differentiation / genetics*
  • Antigens, Differentiation, T-Lymphocyte / genetics
  • Black People / genetics*
  • Brazil
  • CD28 Antigens / genetics
  • CTLA-4 Antigen
  • Exons / genetics
  • Gene Frequency
  • Genotype
  • Humans
  • Inducible T-Cell Co-Stimulator Protein
  • Introns / genetics
  • Linkage Disequilibrium
  • Polymorphism, Single Nucleotide*
  • Promoter Regions, Genetic / genetics
  • White People / genetics*

Substances

  • Antigens, CD
  • Antigens, Differentiation
  • Antigens, Differentiation, T-Lymphocyte
  • CD28 Antigens
  • CTLA-4 Antigen
  • CTLA4 protein, human
  • ICOS protein, human
  • Inducible T-Cell Co-Stimulator Protein