Structure, binding interface and hydrophobic transitions of Ca2+-loaded calbindin-D(28K)

Nat Struct Mol Biol. 2006 Jul;13(7):641-7. doi: 10.1038/nsmb1112. Epub 2006 Jun 25.

Abstract

Calbindin-D(28K) is a Ca2+-binding protein, performing roles as both a calcium buffer and calcium sensor. The NMR solution structure of Ca2+-loaded calbindin-D(28K) reveals a single, globular fold consisting of six distinct EF-hand subdomains, which coordinate Ca2+ in loops on EF1, EF3, EF4 and EF5. Target peptides from Ran-binding protein M and myo-inositol monophosphatase, along with a new target from procaspase-3, are shown to interact with the protein on a surface comprised of alpha5 (EF3), alpha8 (EF4) and the EF2-EF3 and EF4-EF5 loops. Fluorescence experiments reveal that calbindin-D(28K) adopts discrete hydrophobic states as it binds Ca2+. The structure, binding interface and hydrophobic characteristics of Ca2+-loaded calbindin-D(28K) provide the first detailed insights into how this essential protein may function. This structure is one of the largest high-resolution NMR structures and the largest monomeric EF-hand protein to be solved to date.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Calbindins
  • Calcium / metabolism*
  • Cloning, Molecular
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Peptides / chemistry
  • Protein Folding
  • Protein Structure, Secondary
  • Rats
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • S100 Calcium Binding Protein G / chemistry*
  • S100 Calcium Binding Protein G / metabolism*

Substances

  • Calbindins
  • Peptides
  • Recombinant Proteins
  • S100 Calcium Binding Protein G
  • Calcium

Associated data

  • PDB/2F33
  • PDB/2G9B