Structure of a NEMO/IKK-associating domain reveals architecture of the interaction site

Structure. 2008 May;16(5):798-808. doi: 10.1016/j.str.2008.02.012.

Abstract

The phosphorylation of IkappaB by the IKK complex targets it for degradation and releases NF-kappaB for translocation into the nucleus to initiate the inflammatory response, cell proliferation, or cell differentiation. The IKK complex is composed of the catalytic IKKalpha/beta kinases and a regulatory protein, NF-kappaB essential modulator (NEMO; IKKgamma). NEMO associates with the unphosphorylated IKK kinase C termini and activates the IKK complex's catalytic activity. However, detailed structural information about the NEMO/IKK interaction is lacking. In this study, we have identified the minimal requirements for NEMO and IKK kinase association using a variety of biophysical techniques and have solved two crystal structures of the minimal NEMO/IKK kinase associating domains. We demonstrate that the NEMO core domain is a dimer that binds two IKK fragments and identify energetic hot spots that can be exploited to inhibit IKK complex formation with a therapeutic agent.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Biophysics / methods
  • Dimerization
  • Escherichia coli / genetics
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • I-kappa B Kinase / chemistry*
  • I-kappa B Kinase / isolation & purification
  • I-kappa B Kinase / metabolism
  • Inclusion Bodies / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Binding
  • Protein Conformation
  • Protein Folding
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • Spectrum Analysis, Raman

Substances

  • I-kappa B Kinase

Associated data

  • PDB/3BRT
  • PDB/3BRV